Results for 'Deborah C. Smith'

1000+ found
Order:
See also
Deborah Colleen Smith
Kent State University
  1. Virtue, Virtue Skepticism, and the Milgram Studies.Deborah C. Zeller - 2007 - Philosophy in the Contemporary World 14 (2):50-59.
    Virtue, the centerpiece of ancient ethics, has come under attack by virtue skeptics impressed by results of psychology experiments including Milgram’s obedience studies. The virtue skeptic argues that experimental findings suggest that character structures are so fragile vis-à-vis situational factors as to be explanatorily superfluous: virtues and robust character traits are a myth, and should be replaced by situation-specific “narrow dispositions” (Gilbert Harman) or “local traits” (John Doris). This paper argues that the virtue skeptics’ sweeping claims are ill-founded. First, blending (...)
    Download  
     
    Export citation  
     
    Bookmark  
  2. Virtue, Virtue Skepticism, and the Milgram Studies.Deborah C. Zeller - 2007 - Philosophy in the Contemporary World 14 (Fall 2007):50-59.
    ABSTRACT: Virtue, the centerpiece of ancient ethics, has come under attack by virtue skeptics impressed by results of psychology experiments including Milgram's obedience studies. The virtue skeptic argues that experimental findings suggest that character structures are so fragile vis-å-vis situational factors as to be explanatorily superfluous: virtues and robust character traits are a myth, and should be replaced by situation-specific "narrow dispositions" (Gilbert Harman) or "local traits" (John Doris). This paper argues that the virtue skeptics' sweeping claims are ill-founded. First, (...)
    Download  
     
    Export citation  
     
    Bookmark  
  3. Reconciling the irreconcilable: The global economy and the environment. [REVIEW]Deborah C. Poff - 1994 - Journal of Business Ethics 13 (6):439-445.
    This paper focusses on the relationship among structural adjustment policies and practices, the business activities of transnational corporations and what Robert Reich has called the coming irrelevance of corporate nationality. The argument presented is that the force of these combined factors makes environmental sustainability impossible.
    Download  
     
    Export citation  
     
    Bookmark   5 citations  
  4. Infinitism and epistemic normativity.Adam C. Podlaskowski & Joshua A. Smith - 2011 - Synthese 178 (3):515-527.
    Klein’s account of epistemic justification, infinitism, supplies a novel solution to the regress problem. We argue that concentrating on the normative aspect of justification exposes a number of unpalatable consequences for infinitism, all of which warrant rejecting the position. As an intermediary step, we develop a stronger version of the ‘finite minds’ objection.
    Download  
     
    Export citation  
     
    Bookmark   8 citations  
  5. Socrates on the Emotions.Thomas C. Brickhouse & Nicholas D. Smith - 2015 - Plato Journal 15:9-28.
    In this paper we argue that Socrates is a cognitivist about emotions, but then ask how the beliefs that constitute emotions can come into being, and why those beliefs seem more resistant to change through rational persuasion than other beliefs.
    Download  
     
    Export citation  
     
    Bookmark   6 citations  
  6. Probabilistic Regresses and the Availability Problem for Infinitism.Adam C. Podlaskowski & Joshua A. Smith - 2014 - Metaphilosophy 45 (2):211-220.
    Recent work by Peijnenburg, Atkinson, and Herzberg suggests that infinitists who accept a probabilistic construal of justification can overcome significant challenges to their position by attending to mathematical treatments of infinite probabilistic regresses. In this essay, it is argued that care must be taken when assessing the significance of these formal results. Though valuable lessons can be drawn from these mathematical exercises (many of which are not disputed here), the essay argues that it is entirely unclear that the form of (...)
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  7. Practical Knowledge: Outlines of a Theory of Traditions and Skills.J. C. Nyíri & Barry Smith (eds.) - 1988 - Croom Helm.
    A series of papers on different aspects of practical knowledge by Roderick Chisholm, Rudolf Haller, J. C. Nyiri, Eva Picardi, Joachim Schulte Roger Scruton, Barry Smith and Johan Wrede.
    Download  
     
    Export citation  
     
    Bookmark   6 citations  
  8. Nisza.Achille C. Varzi & Barry Smith - 2000 - Filozofia Nauki 3:5–30.
    Pojęcie niszy (otoczenia, kontekstu, siedliska, środowiska) nie cieszy się specjalnym zainteresowaniem ontologów, mimo że ma szerokie zastosowanie w rozmaitych dyscyplinach, od biologii ewolucyjnej po ekonomię. Niniejszy artykuł zawiera pierwszą teorię formalną tego pojęcia — teorię relacji pomiędzy przedmiotami a ich niszami. Teoria ta opiera się na istniejącym dorobku mereologii, topologii i teorii lokalizacji przestrzennej, które są narzędziami ontologii formalnej. Jest ona tutaj ilustrowana głównie za pomocą prostych przykładów z biologii, ale pojęcie niszy należy rozumieć — podobnie jak pojęcia części, granicy (...)
    Download  
     
    Export citation  
     
    Bookmark  
  9. Apology Of Socratic Studies.T. C. Brickhouse & N. D. Smith - 2003 - Polis 20 (1-2):108-127.
    In this paper, we defend Socratic studies as a research programme against several recent attacks, including at least one recently published in Polis . Critics have argued that the study of Socrates, based upon evidence mostly or entirely derived from some set of Plato's dialogues, is founded upon faulty and indefensible historical or hermeneutical technique. We begin by identifying what we believe are the foundational principles of Socratic studies, as the field has been pursued in recent years, and we then (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  10. Formal Ontology for Natural Language Processing and the Integration of Biomedical Databases.Jonathan Simon, James M. Fielding, Mariana C. Dos Santos & Barry Smith - 2005 - International Journal of Medical Informatics 75 (3-4):224-231.
    The central hypothesis of the collaboration between Language and Computing (L&C) and the Institute for Formal Ontology and Medical Information Science (IFOMIS) is that the methodology and conceptual rigor of a philosophically inspired formal ontology greatly benefits application ontologies. To this end r®, L&C’s ontology, which is designed to integrate and reason across various external databases simultaneously, has been submitted to the conceptual demands of IFOMIS’s Basic Formal Ontology (BFO). With this project we aim to move beyond the level of (...)
    Download  
     
    Export citation  
     
    Bookmark   3 citations  
  11. On 'Gestalt qualities' (trans. B. Smith).C. Von Ehrenfels & Barry Smith - 1988 - In Barry Smith (ed.), Foundations of Gestalt Theory. Philosophia. pp. 82--117.
    The theory of Gestalt qualities arose from the attempt to explain how a melody is distinct from the collection of the tones which it comprehends. In this essay from 1890 Christian von Ehrenfels coined the term 'Gestaltqualität' to capture the idea of a pattern which is comprehensible in a single experience. This idea can be applied not only to melodies and other occurrent patterns, but also to continuant patterns such as shapes and colour arrays such as the array of a (...)
    Download  
     
    Export citation  
     
    Bookmark   9 citations  
  12. Commentaries on David Hodgson's "a plain person's free will".Graham Cairns-Smith, Thomas W. Clark, Ravi Gomatam, Robert H. Kane, Nicholas Maxwell, J. J. C. Smart, Sean A. Spence & Henry P. Stapp - 2005 - Journal of Consciousness Studies 12 (1):20-75.
    REMARKS ON EVOLUTION AND TIME-SCALES, Graham Cairns-Smith; HODGSON'S BLACK BOX, Thomas Clark; DO HODGSON'S PROPOSITIONS UNIQUELY CHARACTERIZE FREE WILL?, Ravi Gomatam; WHAT SHOULD WE RETAIN FROM A PLAIN PERSON'S CONCEPT OF FREE WILL?, Gilberto Gomes; ISOLATING DISPARATE CHALLENGES TO HODGSON'S ACCOUNT OF FREE WILL, Liberty Jaswal; FREE AGENCY AND LAWS OF NATURE, Robert Kane; SCIENCE VERSUS REALIZATION OF VALUE, NOT DETERMINISM VERSUS CHOICE, Nicholas Maxwell; COMMENTS ON HODGSON, J.J.C. Smart; THE VIEW FROM WITHIN, Sean Spence; COMMENTARY ON HODGSON, Henry (...)
    Download  
     
    Export citation  
     
    Bookmark  
  13. Fiat and Bona Fide Boundaries.Barry Smith & Achille C. Varzi - 2000 - Philosophy and Phenomenological Research 60 (2):401-420.
    There is a basic distinction, in the realm of spatial boundaries, between bona fide boundaries on the one hand, and fiat boundaries on the other. The former are just the physical boundaries of old. The latter are exemplified especially by boundaries induced through human demarcation, for example in the geographic domain. The classical problems connected with the notions of adjacency, contact, separation and division can be resolved in an intuitive way by recognizing this two-sorted ontology of boundaries. Bona fide boundaries (...)
    Download  
     
    Export citation  
     
    Bookmark   79 citations  
  14. The Chemical Senses.Barry C. Smith - 2015 - In Mohan Matthen (ed.), The Oxford Handbook to Philosophy of Perception. New York, NY, USA: pp. 314-353.
    Long-standing neglect of the chemical senses in the philosophy of perception is due, mostly, to their being regarded as ‘lower’ senses. Smell, taste, and chemically irritated touch are thought to produce mere bodily sensations. However, empirically informed theories of perception can show how these senses lead to perception of objective properties, and why they cannot be treated as special cases of perception modelled on vision. The senses of taste, touch, and smell also combine to create unified perceptions of flavour. The (...)
    Download  
     
    Export citation  
     
    Bookmark   23 citations  
  15. The Objectivity of Tastes and Tasting.Barry C. Smith - 2007 - In Questions of Taste: the philosophy of wine. Oxford University Press.
    Download  
     
    Export citation  
     
    Bookmark   36 citations  
  16. The niche.Barry Smith & Achille C. Varzi - 1999 - Noûs 33 (2):214-238.
    The concept of niche (setting, context, habitat, environment) has been little studied by ontologists, in spite of its wide application in a variety of disciplines from evolutionary biology to economics. What follows is a first formal theory of this concept, a theory of the relations between objects and their niches. The theory builds upon existing work on mereology, topology, and the theory of spatial location as tools of formal ontology. It will be illustrated above all by means of simple biological (...)
    Download  
     
    Export citation  
     
    Bookmark   45 citations  
  17. OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies.Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Melanie Courtot, Alexander D. Diehl, Damion Dooley, William Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert, Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall & Bjoern Peters - 2021 - BioaRxiv.
    Biological ontologies are used to organize, curate, and interpret the vast quantities of data arising from biological experiments. While this works well when using a single ontology, integrating multiple ontologies can be problematic, as they are developed independently, which can lead to incompatibilities. The Open Biological and Biomedical Ontologies Foundry was created to address this by facilitating the development, harmonization, application, and sharing of ontologies, guided by a set of overarching principles. One challenge in reaching these goals was that the (...)
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  18. Fiat and Bona Fide Boundaries: Towards an Ontology of Spatially Extended Objects.Barry Smith & Achille C. Varzi - 1997 - In Stephen Hirtle & Andrew U. Frank (eds.), Spatial Information Theory: International Conference COSIT ‘97. Springer. pp. 103–119.
    Human cognitive acts are directed towards objects extended in space of a wide range of different types. What follows is a new proposal for bringing order into this typological clutter. The theory of spatially extended objects should make room not only for the objects of physics but also for objects at higher levels, including the objects of geography and of related disciplines. It should leave room for different types of boundaries, including both the bona fide boundaries which we find in (...)
    Download  
     
    Export citation  
     
    Bookmark   10 citations  
  19. The Space Domain Ontologies.Alexander P. Cox, C. K. Nebelecky, R. Rudnicki, W. A. Tagliaferri, J. L. Crassidis & B. Smith - 2021 - In National Symposium on Sensor & Data Fusion Committee.
    Achieving space situational awareness requires, at a minimum, the identification, characterization, and tracking of space objects. Leveraging the resultant space object data for purposes such as hostile threat assessment, object identification, and conjunction assessment presents major challenges. This is in part because in characterizing space objects we reference a variety of identifiers, components, subsystems, capabilities, vulnerabilities, origins, missions, orbital elements, patterns of life, operational processes, operational statuses, and so forth, which tend to be defined in highly heterogeneous and sometimes inconsistent (...)
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  20. Why We Still Need Knowledge of Language.Barry C. Smith - 2006 - Croatian Journal of Philosophy 6 (3):431-456.
    In his latest book, Michael Devitt rejects Chomsky’s mentalist conception of linguistics. The case against Chomsky is based on two principal claims. First, that we can separate the study of linguistic competence from the study of its outputs: only the latter belongs to linguistic inquiry. Second, Chomsky’s account of a speaker’s competence as consisiting in the mental representation of rules of a grammar for his language is mistaken. I shall argue, first, that Devitt fails to make a case for separating (...)
    Download  
     
    Export citation  
     
    Bookmark   19 citations  
  21. Speech Sounds and the Direct Meeting of Minds.Barry C. Smith - 2010 - In Matthew Nudds & Casey O'Callaghan (eds.), New Essays on Sound and Perception. Oxford University Press.
    Download  
     
    Export citation  
     
    Bookmark   15 citations  
  22. On Knowing One's Own Language.Barry C. Smith - 1998 - In Crispin Wright, Barry C. Smith & Cynthia Macdonald (eds.), Knowing Our Own Minds. Oxford University Press. pp. 391--428.
    We rely on language to know the minds of others, but does language have a role to play in knowing our own minds? To suppose it does is to look for a connection between mastery of a language and the epistemic relation we bear to our inner lives. What could such a connection consist in? To explore this, I shall examine strategies for explaining self-knowledge in terms of the use we make of language to express and report our mental states. (...)
    Download  
     
    Export citation  
     
    Bookmark   19 citations  
  23. Environmental Metaphysics.Barry Smith & Achille C. Varzi - 2001 - In Uwe A. Meixner Meixner (ed.), Metaphysics in the Post-Metaphysical Age. Proceedings of the 22nd International Wittgenstein-Symposium. Vienna: Hölder-Pichler-Tempsky. pp. 231-242.
    We propose the beginnings of a general theory of environments, of the parts or regions of space in which organisms live and move. We draw on two sources: on the one hand on recent work on the ontology of space; and on the other hand on work by ecological scientists on concepts such as territory, habitat, and niche. An environment is in first approximation a volume of space; it is a specific habitat, location, or site that is suitable or adequate (...)
    Download  
     
    Export citation  
     
    Bookmark   7 citations  
  24. Herbert Spencer's Epigenetic Epistemology.C. U. M. Smith - 1983 - Studies in History and Philosophy of Science Part A 14 (1):1.
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  25. Common Core Conformant Definitions for an Ontology of Commercial Exchange.Eric C. Merrell, Olivier Massin & Barry Smith - 2021 - 2nd International Workshop on Ontology of Social, Legal and Economic Entities (SoLEE).
    In “Toward an Ontology of Commercial Exchange” [11], we proposed human readable definitions for terms that are central to an ontology of commercial exchange. This paper furthers that project in two ways. First, the definitions have been modified to be compatible with the Common Core Ontologies (CCO). CCO is used in a wide variety of domains including the industrial and military domains. Having a commerce ontology compatible with CCO allows data about the exchange of goods relevant to those domains to (...)
    Download  
     
    Export citation  
     
    Bookmark  
  26. The Formal Structure of Ecological Contexts.Barry Smith & Achille C. Varzi - 1999 - In Paolo Bouquet, Patrick Brezillon, Francesca Castellani & Luciano Serafini (eds.), Modeling and Using Context. Proceedings of the Second International and Interdisciplinary Conference. Springer. pp. 339–350.
    This is an informal presentation of the theory of niches understood as ecological contexts. The first part sets out the basic conceptual background. The second part outlines the main principles of the theory and addresses the question of how the theory can be extended to aid our thinking in relation to the special types of causal integrity that characterize niches and niched entities.
    Download  
     
    Export citation  
     
    Bookmark   3 citations  
  27. What we mean, what we think we mean, and how language can surprise us.Barry C. Smith - 2007 - In B. Soria & E. Romero (eds.), Explicit Communication: Robyn Carston's Pragmatics. Palgrave.
    In uttering a sentence we are often take to assert more than its literal meaning - though sometimes we assert less. This phenomenon is taken by many to show that what is said or asserted by a speaker on an occasion is a contextually enriched or developed version of the semantic content of the words uttered. I argue that we can resist this conclusion by recognizing that what we think we are asserting, or take others to assert, involves selective attention (...)
    Download  
     
    Export citation  
     
    Bookmark  
  28. The formal ontology of boundaries.Barry Smith & Achille C. Varzi - 1997 - Electronic Journal of Analytic Philosophy 5 (5).
    Revised version published as Barry Smith and Achille Varzi, “Fiat and Bona Fide Boundaries”, Philosophy and Phenomenological Research, 60: 2 (March 2000), 401–420.
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  29. Relativism and Predicates of Personal Taste.Barry C. Smith - 2010 - In Francois Recanati, Isidora Stojanovic & Neftali Villanueva (eds.), Context-depenece, Perspective and Relativity. De Gruyer Mouton.
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  30. What Remains of Our Knowledge of Language?: Reply to Collins.Barry C. Smith - 2008 - Croatian Journal of Philosophy 8 (22):557-75.
    The new Chomskian orthodoxy denies that our linguistic competence gives us knowledge *of* a language, and that the representations in the language faculty are representations *of* anything. In reply, I have argued that through their intuitions speaker/hearers, (but not their language faculties) have knowledge of language, though not of any externally existing language. In order to count as knowledge, these intuitions must track linguistic facts represented in the language faculty. I defend this idea against the objections Collins has raised to (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  31. Publicity, externalism and inner states.Barry C. Smith - 2006 - In Tomáš Marvan (ed.), What Determines Content?: The Internalism/Externalism Dispute. Cambridge Scholars Press.
    The critic Cyril Connolly once pointed out that diarists don’t make novelists. He went on to describe the problem for the would-be writer. “Writing for oneself: no public. Writing for others: no privacy” (Cyril Connolly, Journal). This paper addresses Connolly's worry about the public ad private: how can we reconcile the inner and conscious dimension of speech with its outer and public dimension? For if what people mean by their words involves, or consists in, what they have in mind when (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  32. The Ontology for Biomedical Investigations.Anita Bandrowski, Ryan Brinkman, Mathias Brochhausen, Matthew H. Brush, Bill Bug, Marcus C. Chibucos, Kevin Clancy, Mélanie Courtot, Dirk Derom, Michel Dumontier, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Frank Gibson, Alejandra Gonzalez-Beltran, Melissa A. Haendel, Yongqun He, Mervi Heiskanen, Tina Hernandez-Boussard, Mark Jensen, Yu Lin, Allyson L. Lister, Phillip Lord, James Malone, Elisabetta Manduchi, Monnie McGee, Norman Morrison, James A. Overton, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H. Scheuermann, Daniel Schober, Barry Smith, Larisa N. Soldatova, Christian J. Stoeckert, Chris F. Taylor, Carlo Torniai, Jessica A. Turner, Randi Vita, Patricia L. Whetzel & Jie Zheng - 2016 - PLoS ONE 11 (4):e0154556.
    The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with precisely defined meanings to describe all aspects of how investigations in the biological and medical domains are conducted. OBI re-uses ontologies that provide a representation of biomedical knowledge from the Open Biological and Biomedical Ontologies (OBO) project and adds the ability to describe how this knowledge was derived. We here describe the state of OBI and several applications that are using it, such as adding semantic expressivity to (...)
    Download  
     
    Export citation  
     
    Bookmark   28 citations  
  33. Ontological tools for geographic representation.Roberto Casati, Barry Smith & Achille C. Varzi - 1998 - In Nicola Guarino (ed.), Formal Ontology in Information Systems (FOIS). Ios Press. pp. 77--85.
    This paper is concerned with certain ontological issues in the foundations of geographic representation. It sets out what these basic issues are, describes the tools needed to deal with them, and draws some implications for a general theory of spatial representation. Our approach has ramifications in the domains of mereology, topology, and the theory of location, and the question of the interaction of these three domains within a unified spatial representation theory is addressed. In the final part we also consider (...)
    Download  
     
    Export citation  
     
    Bookmark   12 citations  
  34. The Protein Ontology: A structured representation of protein forms and complexes.Darren Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Carol J. Bult, Michael Caudy, Harold J. Drabkin, Peter D’Eustachio, Alexei V. Evsikov, Hongzhan Huang, Jules Nchoutmboube, Natalia V. Roberts, Barry Smith, Jian Zhang & Cathy H. Wu - 2011 - Nucleic Acids Research 39 (1):D539-D545.
    The Protein Ontology (PRO) provides a formal, logically-based classification of specific protein classes including structured representations of protein isoforms, variants and modified forms. Initially focused on proteins found in human, mouse and Escherichia coli, PRO now includes representations of protein complexes. The PRO Consortium works in concert with the developers of other biomedical ontologies and protein knowledge bases to provide the ability to formally organize and integrate representations of precise protein forms so as to enhance accessibility to results of protein (...)
    Download  
     
    Export citation  
     
    Bookmark   10 citations  
  35. Finding Our Way through Phenotypes.Andrew R. Deans, Suzanna E. Lewis, Eva Huala, Salvatore S. Anzaldo, Michael Ashburner, James P. Balhoff, David C. Blackburn, Judith A. Blake, J. Gordon Burleigh, Bruno Chanet, Laurel D. Cooper, Mélanie Courtot, Sándor Csösz, Hong Cui, Barry Smith & Others - 2015 - PLoS Biol 13 (1):e1002033.
    Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across many key fields in biology, including genomics, systems biology, development, medicine, evolution, ecology, and systematics. Here we survey the current phenomics landscape, including data resources and handling, and the progress that (...)
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  36. Discussion of “Biomedical informatics: We are what we publish”.Geissbuhler Antoine, W. E. Hammond, A. Hasman, R. Hussein, R. Koppel, C. A. Kulikowski, V. Maojo, F. Martin-Sanchez, P. W. Moorman, Moura La, F. G. De Quiros, M. J. Schuemle, Barry Smith & J. Talmon - 2013 - Methods of Information in Medicine 52 (6):547-562.
    This article is part of a For-Discussion-Section of Methods of Information in Medicine about the paper "Biomedical Informatics: We Are What We Publish", written by Peter L. Elkin, Steven H. Brown, and Graham Wright. It is introduced by an editorial. This article contains the combined commentaries invited to independently comment on the Elkin et al. paper. In subsequent issues the discussion can continue through letters to the editor.
    Download  
     
    Export citation  
     
    Bookmark  
  37. In Silico Approaches and the Role of Ontologies in Aging Research.Georg Fuellen, Melanie Börries, Hauke Busch, Aubrey de Grey, Udo Hahn, Thomas Hiller, Andreas Hoeflich, Ludger Jansen, Georges E. Janssens, Christoph Kaleta, Anne C. Meinema, Sascha Schäuble, Paul N. Schofield, Barry Smith & Others - 2013 - Rejuvenation Research 16 (6):540-546.
    The 2013 Rostock Symposium on Systems Biology and Bioinformatics in Aging Research was again dedicated to dissecting the aging process using in silico means. A particular focus was on ontologies, as these are a key technology to systematically integrate heterogeneous information about the aging process. Related topics were databases and data integration. Other talks tackled modeling issues and applications, the latter including talks focussed on marker development and cellular stress as well as on diseases, in particular on diseases of kidney (...)
    Download  
     
    Export citation  
     
    Bookmark  
  38. Development of FuGO: An ontology for functional genomics investigations.Patricia L. Whetzel, Ryan R. Brinkman, Helen C. Causton, Liju Fan, Dawn Field, Jennifer Fostel, Gilberto Fragoso, Tanya Gray, Mervi Heiskana, Tina Hernandez-Boussard & Barry Smith - 2006 - Omics: A Journal of Integrative Biology 10 (2):199-204.
    The development of the Functional Genomics Investigation Ontology (FuGO) is a collaborative, international effort that will provide a resource for annotating functional genomics investigations, including the study design, protocols and instrumentation used, the data generated and the types of analysis performed on the data. FuGO will contain both terms that are universal to all functional genomics investigations and those that are domain specific. In this way, the ontology will serve as the “semantic glue” to provide a common understanding of data (...)
    Download  
     
    Export citation  
     
    Bookmark   4 citations  
  39. Ontology-assisted database integration to support natural language processing and biomedical data-mining.Jean-Luc Verschelde, Marianna C. Santos, Tom Deray, Barry Smith & Werner Ceusters - 2004 - Journal of Integrative Bioinformatics. Repr. In: Yearbook of Bioinformatics , 39–48 1:1-10.
    Successful biomedical data mining and information extraction require a complete picture of biological phenomena such as genes, biological processes, and diseases; as these exist on different levels of granularity. To realize this goal, several freely available heterogeneous databases as well as proprietary structured datasets have to be integrated into a single global customizable scheme. We will present a tool to integrate different biological data sources by mapping them to a proprietary biomedical ontology that has been developed for the purposes of (...)
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  40. Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis.R. Karp David, Marthandan Nishanth, G. E. Marsh Steven, Ahn Chul, C. Arnett Frank, S. DeLuca David, D. Diehl Alexander, Dunivin Raymond, Eilbeck Karen, Feolo Michael & Barry Smith - 2009 - Human Molecular Genetics 19 (4):707-719.
    Significant associations have been found between specific human leukocyte antigen (HLA) alleles and organ transplant rejection, autoimmune disease development, and the response to infection. Traditional searches for disease associations have conventionally measured risk associated with the presence of individual HLA alleles. However, given the high level of HLA polymorphism, the pattern of amino acid variability, and the fact that most of the HLA variation occurs at functionally important sites, it may be that a combination of variable amino acid sites shared (...)
    Download  
     
    Export citation  
     
    Bookmark  
  41. A Theory of Granular Partitions.Thomas Bittner & Barry Smith - 2003 - In M. Duckham, M. F. Goodchild & M. F. Worboys (eds.), Foundations of Geographic Information Science. London: Taylor & Francis. pp. 117-151.
    We have a variety of different ways of dividing up, classifying, mapping, sorting and listing the objects in reality. The theory of granular partitions presented here seeks to provide a general and unified basis for understanding such phenomena in formal terms that is more realistic than existing alternatives. Our theory has two orthogonal parts: the first is a theory of classification; it provides an account of partitions as cells and subcells; the second is a theory of reference or intentionality; it (...)
    Download  
     
    Export citation  
     
    Bookmark   51 citations  
  42. Ontological realism: A methodology for coordinated evolution of scientific ontologies.Barry Smith & Werner Ceusters - 2010 - Applied ontology 5 (3):139-188.
    Since 2002 we have been testing and refining a methodology for ontology development that is now being used by multiple groups of researchers in different life science domains. Gary Merrill, in a recent paper in this journal, describes some of the reasons why this methodology has been found attractive by researchers in the biological and biomedical sciences. At the same time he assails the methodology on philosophical grounds, focusing specifically on our recommendation that ontologies developed for scientific purposes should be (...)
    Download  
     
    Export citation  
     
    Bookmark   57 citations  
  43. LinkSuite™: Software Tools for Formally Robust Ontology-Based Data and Information Integration.Werner Ceusters, Barry Smith & James Matthew Fielding - 2004 - In Proceedings of DILS 2004 (Data Integration in the Life Sciences), (Lecture Notes in Bioinformatics, 2994). Springer. pp. 1-16.
    The integration of information resources in the life sciences is one of the most challenging problems facing bioinformatics today. We describe how Language and Computing nv, originally a developer of ontology-based natural language understanding systems for the healthcare domain, is developing a framework for the integration of structured data with unstructured information contained in natural language texts. L&C’s LinkSuite™ combines the flexibility of a modular software architecture with an ontology based on rigorous philosophical and logical principles that is designed to (...)
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  44. Foundations of Gestalt Theory.Barry Smith (ed.) - 1988 - Philosophia.
    In 1890 Christian von Ehrenfels published his classic paper "Über 'Gestaltqualitäten'", the first systematic investigation of the philosophy and psychology of Gestalt. Ehrenfels thereby issued an important challenge to the psychological atomism that was still predominant in his day. His paper not only exerted a powerful influence on the philosophy of the Meinong school, it also marked the beginning of the Gestalt tradition in psychology, later associated with the work of Wertheimer, Köhler and Koffka in Berlin. Includes papers by C. (...)
    Download  
     
    Export citation  
     
    Bookmark   30 citations  
  45. Using ontology in query answering systems: Scenarios, requirements and challenges.Werner Ceusters, Barry Smith & Maarten Van Mol - 2003 - In R. Bernardi & M. Moortgat (eds.), Questions and Answers: Theoretical and Applied Perspectives, Proceedings of the 2nd CoLogNET-Elsnet Symposium, December 2003. Amsterdam: pp. 5-15.
    Equipped with the ultimate query answering system, computers would finally be in a position to address all our information needs in a natural way. In this paper, we describe how Language and Computing nv (L&C), a developer of ontology-based natural language understanding systems for the healthcare domain, is working towards the ultimate Question Answering (QA) System for healthcare workers. L&C’s company strategy in this area is to design in a step-by-step fashion the essential components of such a system, each component (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  46. Against Fantology.Barry Smith - 2005 - In Johann C. Marek & Maria E. Reicher (eds.), Experience and Analysis. Vienna: HPT&ÖBV. pp. 153-170.
    The analytical philosophy of the last hundred years has been heavily influenced by a doctrine to the effect that the key to the correct understanding of reality is captured syntactically in the ‘Fa’ (or, in more sophisticated versions, in the ‘Rab’) of standard first order predicate logic. Here ‘F’ stands for what is general in reality and ‘a’ for what is individual. Hence “f(a)ntology”. Because predicate logic has exactly two syntactically different kinds of referring expressions—‘F’, ‘G’, ‘R’, etc., and ‘a’, (...)
    Download  
     
    Export citation  
     
    Bookmark   44 citations  
  47. John Searle: From speech acts to social reality.Barry Smith - 2003 - In John Searle. Cambridge: Cambridge University Press. pp. 1-33.
    We provide an overview of Searle's contributions to speech act theory and the ontology of social reality, focusing on his theory of constitutive rules. In early versions of this theory, Searle proposed that all such rules have the form 'X counts as Y in context C' formula – as for example when Barack Obama (X) counts as President of the United States (Y) in the context of US political affairs. Crucially, the X and the Y terms are here identical. A (...)
    Download  
     
    Export citation  
     
    Bookmark   29 citations  
  48. The Construction of Social Reality: An Exchange.Barry Smith & John Searle - 2003 - American Journal of Economics and Sociology 62 (2):285-309.
    Part 1 of this exchange consists in a critique by Smith of Searle’s The Construction of Social Reality focusing on Searle’s use of the formula ‘X counts as Y in context C’. Smith argues that this formula works well for social objects such as dollar bills and presidents where the corresponding X terms (pieces of paper, human beings) are easy to identify. In cases such as debts and prices and money in a bank's computers, however, the formula fails, (...)
    Download  
     
    Export citation  
     
    Bookmark   47 citations  
  49. Topological Foundations of Cognitive Science.Carola Eschenbach, Christopher Habel & Barry Smith (eds.) - 1984 - Hamburg: Graduiertenkolleg Kognitionswissenschaft.
    A collection of papers presented at the First International Summer Institute in Cognitive Science, University at Buffalo, July 1994, including the following papers: ** Topological Foundations of Cognitive Science, Barry Smith ** The Bounds of Axiomatisation, Graham White ** Rethinking Boundaries, Wojciech Zelaniec ** Sheaf Mereology and Space Cognition, Jean Petitot ** A Mereotopological Definition of 'Point', Carola Eschenbach ** Discreteness, Finiteness, and the Structure of Topological Spaces, Christopher Habel ** Mass Reference and the Geometry of Solids, Almerindo E. (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  50. Collaborative Virtual Worlds and Productive Failure.Michael J. Jacobson, Charlotte Taylor, Anne Newstead, Wai Yat Wong, Deborah Richards, Meredith Taylor, Porte John, Kartiko Iwan, Kapur Manu & Hu Chun - 2011 - In Proceedings of the CSCL (Computer Supported Cognition and Learning) III. University of Hong Kong.
    This paper reports on an ongoing ARC Discovery Project that is conducting design research into learning in collaborative virtual worlds (CVW).The paper will describe three design components of the project: (a) pedagogical design, (b)technical and graphics design, and (c) learning research design. The perspectives of each design team will be discussed and how the three teams worked together to produce the CVW. The development of productive failure learning activities for the CVW will be discussed and there will be an interactive (...)
    Download  
     
    Export citation  
     
    Bookmark  
1 — 50 / 1000